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Computational Methods for Protein Structure

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Computational Methods for Protein Structure Prediction & Modeling
Volume 1: Basic Characterization
Ying Xu, 

Dong Xu, and
Jie Liang



Table of Contents 

1  A Historical Perspective and Overview of Protein Structure Prediction 

2  Empirical Force Fields 

3  Knowledge-Based Energy Functions for Computational Studies of Proteins

4  Computational Methods for Domain Partitioning of Protein Structures

5 Protein Structure Comparison and Classification

6 Computation of Protein Geometry and Its Applications: Packing and Function Prediction

7 Local Structure Prediction of Proteins 

8 Protein Contact Map Prediction

9 Modeling Protein Aggregate Assembly and Structure

10 Homology-Based Modeling of Protein Structure

11 Modeling Protein Structures Based on Density Maps at Intermediate Resolutions




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